Transcript: ENST00000586569.1 TNFRSF11A-001

Description

tumor necrosis factor receptor superfamily, member 11a, NFKB activator [Source:HGNC Symbol;Acc:11908]

Gene Synonyms

CD265, FEO, LOH18CR1, ODFR, OFE, OPTB7, OSTS, PDB2, RANK, TRANCER

Location

About this transcript

This transcript has 10 exons, is annotated with 28 domains and features, is associated with 27569 variant alleles and maps to 516 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000586569.1	TNFRSF11A-001	8138	616aa	ENSP00000465500.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11980	N0GVH0 Q9Y6Q6	NM_003839.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000269485.7	TNFRSF11A-002	3591	299aa	ENSP00000269485.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59324	Q59EP9 Q9Y6Q6	NM_001270951.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000592013.1	TNFRSF11A-003	575	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000587697.1	TNFRSF11A-004	528	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 8,138 bps, Translation length: 616 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y6Q6

CCDS

This transcript is a member of the Human CCDS set: CCDS11980

Version

ENST00000586569.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256186 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.