Transcript: ENST00000573616.1 WDR45B-006

Description

WD repeat domain 45B [Source:HGNC Symbol;Acc:25072]

Gene Synonyms

WDR45L, WIPI-3, WIPI3

Location

Chromosome 17: 80,574,400-80,606,320 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 3 domains and features, is associated with 16972 variant alleles and maps to 175 oligo probes.

Gene

This transcript is a product of gene ENSG00000141580.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000392325.4	WDR45B-001	2587	344aa	ENSP00000376139.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11815	B4DMI6 Q5MNZ6	NM_019613.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000572583.1	WDR45B-002	2322	201aa	ENSP00000461488.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000573616.1	WDR45B-006	896	174aa	ENSP00000458738.1	Nonsense mediated decay		I3L1D0	-	-
ENST00000571817.1	WDR45B-005	889	85aa	ENSP00000461355.1	Nonsense mediated decay		I3L4L8	-	-
ENST00000576517.1	WDR45B-010	779	124aa	ENSP00000460297.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000571835.1	WDR45B-007	869	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000571767.1	WDR45B-008	789	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000574828.1	WDR45B-004	765	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000573656.1	WDR45B-009	654	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000577774.1	WDR45B-011	252	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 6, Transcript length: 896 bps, Translation length: 174 residues

Version

ENST00000573616.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000440015 (version 1)

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Transcript: ENST00000573616.1 WDR45B-006

Summary