Transcript: ENST00000555521.1 MDGA2-010

Description

MAM domain containing glycosylphosphatidylinositol anchor 2 [Source:HGNC Symbol;Acc:19835]

Gene Synonyms

MAMDC1, c14_5286

Location

Chromosome 14: 47,343,122-47,389,377 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 19733 variant alleles and maps to 110 oligo probes.

Gene

This transcript is a product of gene ENSG00000139915.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000426342.1	MDGA2-202	5239	727aa	ENSP00000405456.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41948	F8WE89 Q7Z553	NM_182830.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399232.2	MDGA2-001	5075	956aa	ENSP00000382178.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45098	F8WE89 Q7Z553	NM_001113498.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000357362.3	MDGA2-002	2965	727aa	ENSP00000349925.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41948	F8WE89 Q7Z553	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399222.3	MDGA2-201	2416	158aa	ENSP00000382168.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8WE89	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554762.1	MDGA2-007	757	253aa	ENSP00000450827.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000486952.2	MDGA2-005	574	142aa	ENSP00000452515.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V5U0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000557238.1	MDGA2-008	3635	233aa	ENSP00000452593.1	Nonsense mediated decay		G3V5Z1	-	-
ENST00000482848.3	MDGA2-006	1918	250aa	ENSP00000434991.2	Nonsense mediated decay		E9PMG9	-	-
ENST00000472499.2	MDGA2-004	511	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000555521.1	MDGA2-010	644	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557516.1	MDGA2-009	593	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 644 bps,

Version

ENST00000555521.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000410852 (version 1)

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Transcript: ENST00000555521.1 MDGA2-010

Summary