Transcript: ENST00000478214.1 HMGA1-003

Description

high mobility group AT-hook 1 [Source:HGNC Symbol;Acc:5010]

Gene Synonyms

HMG-R, HMGA1A, HMGIY

Location

Chromosome 6: 34,204,981-34,212,928 forward strand.

About this transcript

This transcript has 5 exons, is associated with 4789 variant alleles and maps to 570 oligo probes.

Gene

This transcript is a product of gene ENSG00000137309.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000447654.1	HMGA1-203	2159	107aa	ENSP00000399888.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4789	P17096	NM_145902.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000311487.5	HMGA1-004	1920	107aa	ENSP00000308227.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4789	P17096	NM_145899.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000401473.3	HMGA1-002	1887	96aa	ENSP00000385693.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4788	P17096 Q5T6U8	NM_002131.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374116.3	HMGA1-201	1848	96aa	ENSP00000363230.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4788	P17096 Q5T6U8	NM_145905.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000347617.6	HMGA1-001	1773	96aa	ENSP00000288245.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4788	P17096 Q5T6U8	NM_145903.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395004.3	HMGA1-202	1726	328aa	ENSP00000378452.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BYM6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000478214.1	HMGA1-003	716	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 716 bps,

Version

ENST00000478214.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000040216 (version 1)

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Transcript: ENST00000478214.1 HMGA1-003

Summary