Transcript: ENST00000258742.5 NUPL2-001

Description

nucleoporin like 2 [Source:HGNC Symbol;Acc:17010]

Gene Synonyms

CG1, H_RG271G13.9, NLP-1, NLP_1, hCG1

Location

Chromosome 7: 23,221,446-23,240,628 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 11 domains and features, is associated with 9256 variant alleles and maps to 399 oligo probes.

Gene

This transcript is a product of gene ENSG00000136243.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000258742.5	NUPL2-001	1795	423aa	ENSP00000258742.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5379	O15504	NM_007342.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413919.1	NUPL2-002	1329	435aa	ENSP00000401475.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYA1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000410002.3	NUPL2-008	680	155aa	ENSP00000387330.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DT96	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000438012.1	NUPL2-003	1653	224aa	ENSP00000415511.1	Nonsense mediated decay		O15504	-	-
ENST00000437140.1	NUPL2-005	1285	44aa	ENSP00000406677.1	Nonsense mediated decay		F8WC66	-	-
ENST00000487595.1	NUPL2-009	623	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477844.1	NUPL2-006	2529	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485250.1	NUPL2-004	2010	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489145.1	NUPL2-011	776	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000497500.1	NUPL2-007	739	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486136.1	NUPL2-010	350	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,795 bps, Translation length: 423 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15504

CCDS

This transcript is a member of the Human CCDS set: CCDS5379

Version

ENST00000258742.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000214017 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000258742.5 NUPL2-001

Summary