Transcript: ENST00000378565.5 ITM2B-001

Description

integral membrane protein 2B [Source:HGNC Symbol;Acc:6174]

Gene Synonyms

ABRI, BRI, BRI2, BRICD2B, E25B, E3-16, FBD, imBRI2

Location

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 12371 variant alleles and maps to 558 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000378565.5	ITM2B-001	2104	266aa	ENSP00000367828.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9409	Q5W0A3 Q9Y287	NM_021999.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378549.5	ITM2B-003	805	160aa	ENSP00000367811.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5W0A2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000607866.1	ITM2B-004	596	53aa	ENSP00000475556.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000463839.1	ITM2B-002	542	29aa	ENSP00000476004.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,104 bps, Translation length: 266 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y287

CCDS

This transcript is a member of the Human CCDS set: CCDS9409

Version

ENST00000378565.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000044870 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.