Transcript: ENST00000552468.1 B4GALNT1-009

Description

beta-1,4-N-acetyl-galactosaminyl transferase 1 [Source:HGNC Symbol;Acc:4117]

Gene Synonyms

GALGT, GALNACT, GalNAc-T, SIAT2, SPG26, beta1-4GalNAc-T

Location

Chromosome 12: 58,019,955-58,023,148 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 1726 variant alleles and maps to 351 oligo probes.

Gene

This transcript is a product of gene ENSG00000135454.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000341156.4	B4GALNT1-002	3036	533aa	ENSP00000341562.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8950	F8TDK4 F8VR44 F8VU35 F8VW33 Q00973	NM_001478.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000550764.1	B4GALNT1-004	1967	328aa	ENSP00000450303.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS61171	F8TDK7 F8VR44 F8VU35 F8VW33 Q8N636	NM_001276469.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000418555.2	B4GALNT1-006	1861	478aa	ENSP00000401601.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS61170	B4DE26 F8TDK5	NM_001276468.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000552350.1	B4GALNT1-005	1649	328aa	ENSP00000448500.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS61171	F8TDK7 F8VR44 F8VU35 F8VW33 Q8N636	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449184.3	B4GALNT1-003	1633	304aa	ENSP00000473533.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DSP5 F8TDK6 F8VR44 F8VU35 F8VW33	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548888.1	B4GALNT1-014	841	237aa	ENSP00000447945.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VR44 F8VU35 F8VW33	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000551220.1	B4GALNT1-010	837	120aa	ENSP00000446566.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VR44 F8VW33	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000547741.1	B4GALNT1-016	453	151aa	ENSP00000448577.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000552798.1	B4GALNT1-007	1945	231aa	ENSP00000447076.1	Nonsense mediated decay		F8VR44 F8VW33 F8W1A7	-	-
ENST00000549391.1	B4GALNT1-015	879	127aa	ENSP00000447750.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000548487.1	B4GALNT1-013	562	81aa	ENSP00000449534.1	Nonsense mediated decay		F8VW33	-	-
ENST00000552219.1	B4GALNT1-011	502	96aa	ENSP00000448340.1	Nonsense mediated decay		F8VSE0	-	-
ENST00000550943.1	B4GALNT1-012	482	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000553142.1	B4GALNT1-001	5580	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000552468.1	B4GALNT1-009	2538	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551925.1	B4GALNT1-008	1003	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 2,538 bps,

Version

ENST00000552468.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000407854 (version 1)

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Transcript: ENST00000552468.1 B4GALNT1-009

Summary