Transcript: ENST00000467392.1 RINT1-002

Description

RAD50 interactor 1 [Source:HGNC Symbol;Acc:21876]

Gene Synonyms

FLJ11785, RINT-1

Location

Chromosome 7: 105,172,616-105,187,768 forward strand.

About this transcript

This transcript has 6 exons, is associated with 6908 variant alleles and maps to 198 oligo probes.

Gene

This transcript is a product of gene ENSG00000135249.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000257700.2	RINT1-001	2976	792aa	ENSP00000257700.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34726	Q6NUQ1	NM_021930.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000493041.1	RINT1-003	563	143aa	ENSP00000417954.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J5S3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000497979.1	RINT1-008	2627	57aa	ENSP00000420582.1	Nonsense mediated decay		F8WDC5	-	-
ENST00000467392.1	RINT1-002	837	54aa	ENSP00000418805.1	Nonsense mediated decay		F8WC46	-	-
ENST00000482041.1	RINT1-004	578	41aa	ENSP00000417107.1	Nonsense mediated decay		F8WAZ2	-	-
ENST00000477285.1	RINT1-005	404	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474123.1	RINT1-007	811	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493258.1	RINT1-006	497	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 837 bps, Translation length: 54 residues

Version

ENST00000467392.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000348687 (version 1)

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Transcript: ENST00000467392.1 RINT1-002

Summary