Transcript: ENST00000257700.2 RINT1-001

Description

RAD50 interactor 1 [Source:HGNC Symbol;Acc:21876]

Gene Synonyms

FLJ11785, RINT-1

Location

Chromosome 7: 105,172,532-105,208,124 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 6 domains and features, is associated with 16346 variant alleles and maps to 634 oligo probes.

Gene

This transcript is a product of gene ENSG00000135249.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000257700.2	RINT1-001	2976	792aa	ENSP00000257700.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34726	Q6NUQ1	NM_021930.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000493041.1	RINT1-003	563	143aa	ENSP00000417954.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J5S3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000497979.1	RINT1-008	2627	57aa	ENSP00000420582.1	Nonsense mediated decay		F8WDC5	-	-
ENST00000467392.1	RINT1-002	837	54aa	ENSP00000418805.1	Nonsense mediated decay		F8WC46	-	-
ENST00000482041.1	RINT1-004	578	41aa	ENSP00000417107.1	Nonsense mediated decay		F8WAZ2	-	-
ENST00000477285.1	RINT1-005	404	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474123.1	RINT1-007	811	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493258.1	RINT1-006	497	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 2,976 bps, Translation length: 792 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6NUQ1

CCDS

This transcript is a member of the Human CCDS set: CCDS34726

Version

ENST00000257700.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000348686 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000257700.2 RINT1-001

Summary