Transcript: ENST00000479412.2 NOTCH2-004

Description

notch 2 [Source:HGNC Symbol;Acc:7882]

Gene Synonyms

AGS2, HJCYS, hN2

Location

Chromosome 1: 120,492,743-120,612,240 reverse strand.

About this transcript

This transcript has 14 exons, is associated with 56015 variant alleles and maps to 471 oligo probes.

Gene

This transcript is a product of gene ENSG00000134250.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000256646.2	NOTCH2-001	11389	2471aa	ENSP00000256646.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS908	Q04721 Q13560 Q9UFD5	NM_024408.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000602566.1	NOTCH2-006	5046	235aa	ENSP00000473427.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		R4GN02	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000493703.1	NOTCH2-005	553	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478864.1	NOTCH2-003	520	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489731.1	NOTCH2-002	414	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479412.2	NOTCH2-004	3221	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 0, Transcript length: 3,221 bps,

Version

ENST00000479412.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000033682 (version 3)

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Transcript: ENST00000479412.2 NOTCH2-004

Summary