Transcript: ENST00000356576.4 COG6-003

Description

component of oligomeric golgi complex 6 [Source:HGNC Symbol;Acc:18621]

Gene Synonyms

CDG2L, COD2, KIAA1134, SHNS

Location

Chromosome 13: 40,229,861-40,326,637 forward strand.

About this transcript

This transcript has 20 exons, is annotated with 2 domains and features, is associated with 40432 variant alleles and maps to 726 oligo probes.

Gene

This transcript is a product of gene ENSG00000133103.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000455146.3	COG6-002	3563	657aa	ENSP00000397441.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9370	B4DG73 Q9Y2V7	NM_020751.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000416691.1	COG6-001	5257	615aa	ENSP00000403733.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45042	Q9Y2V7	NM_001145079.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000422759.2	COG6-009	658	197aa	ENSP00000412877.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H8M2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000356576.4	COG6-003	3449	75aa	ENSP00000348983.4	Nonsense mediated decay		Q9Y2V7	-	-
ENST00000536488.1	COG6-010	564	134aa	ENSP00000445217.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000543804.1	COG6-008	553	62aa	ENSP00000440473.1	Nonsense mediated decay		F5GX38	-	-
ENST00000543790.1	COG6-007	546	61aa	ENSP00000440438.1	Nonsense mediated decay		F5GX76	-	-
ENST00000542266.1	COG6-006	528	61aa	ENSP00000441297.1	Nonsense mediated decay		F5GX76	-	-
ENST00000465775.1	COG6-004	753	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000537156.1	COG6-011	530	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460701.1	COG6-005	318	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 3, Transcript length: 3,449 bps, Translation length: 75 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y2V7

Version

ENST00000356576.4

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000044623 (version 2)

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Transcript: ENST00000356576.4 COG6-003

Summary