Transcript: ENST00000255409.3 CHI3L1-001

Description

chitinase 3-like 1 (cartilage glycoprotein-39) [Source:HGNC Symbol;Acc:1932]

Gene Synonyms

ASRT7, CGP-39, GP-39, GP39, HC-gp39, HCGP-3P, YKL-40, YKL40, YYL-40, hCGP-39

Location

About this transcript

This transcript has 10 exons, is annotated with 12 domains and features, is associated with 3919 variant alleles and maps to 526 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000255409.3	CHI3L1-001	1792	383aa	ENSP00000255409.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1435	P36222 Q9NY41	NM_001276.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000404436.2	CHI3L1-005	921	152aa	ENSP00000385350.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NY41	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000473185.1	CHI3L1-002	1920	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472064.1	CHI3L1-003	890	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478742.1	CHI3L1-004	825	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,792 bps, Translation length: 383 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P36222

CCDS

This transcript is a member of the Human CCDS set: CCDS1435

Version

ENST00000255409.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000100265 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.