Transcript: ENST00000255266.5 PDE6A-001

Description

phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:HGNC Symbol;Acc:8785]

Gene Synonyms

CGPR-A, PDEA, RP43

Location

About this transcript

This transcript has 22 exons, is annotated with 27 domains and features, is associated with 38344 variant alleles and maps to 686 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000255266.5	PDE6A-001	5642	860aa	ENSP00000255266.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4299	O75316 P16499	NM_000440.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508173.1	PDE6A-002	5706	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512670.1	PDE6A-003	2189	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 22, Coding exons: 22, Transcript length: 5,642 bps, Translation length: 860 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P16499

CCDS

This transcript is a member of the Human CCDS set: CCDS4299

Version

ENST00000255266.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252326 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.