Transcript: ENST00000564399.1 VPS4A-003

Description

vacuolar protein sorting 4 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:13488]

Gene Synonyms

FLJ22197, SKD1, SKD1A, SKD2, VPS4, VPS4-1

Location

About this transcript

This transcript has 2 exons, is associated with 690 variant alleles and maps to 54 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000254950.11	VPS4A-002	2203	437aa	ENSP00000254950.11	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45517	Q9UF30 Q9UN37	NM_013245.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000564399.1	VPS4A-003	471	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000566354.1	VPS4A-001	2329	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000562754.1	VPS4A-004	633	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 471 bps,

Version

ENST00000564399.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000430565 (version 1)