Transcript: ENST00000471992.1 ERAL1-003

Description

Era-like 12S mitochondrial rRNA chaperone 1 [Source:HGNC Symbol;Acc:3424]

Gene Synonyms

ERA, ERAL1A, H-ERA, HERA, HERA-A, HERA-B

Location

Chromosome 17: 27,185,056-27,188,027 forward strand.

About this transcript

This transcript has 5 exons, is associated with 1396 variant alleles and maps to 443 oligo probes.

Gene

This transcript is a product of gene ENSG00000132591.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000254928.5	ERAL1-001	1925	437aa	ENSP00000254928.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11244	O75616	NM_005702.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000580917.2	ERAL1-009	850	284aa	ENSP00000464402.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000583487.1	ERAL1-010	695	80aa	ENSP00000467860.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EQJ8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000461894.1	ERAL1-002	1628	276aa	ENSP00000464607.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000412138.2	ERAL1-004	1039	171aa	ENSP00000396125.2	Nonsense mediated decay		J3QT61	-	-
ENST00000578001.1	ERAL1-008	579	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471992.1	ERAL1-003	1508	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000577942.1	ERAL1-006	698	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,508 bps,

Version

ENST00000471992.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000255939 (version 2)

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Transcript: ENST00000471992.1 ERAL1-003

Summary