Transcript: ENST00000254801.4 IGJ-001

Description

immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides [Source:HGNC Symbol;Acc:5713]

Gene Synonyms

IGCJ, JCH

Location

Chromosome 4: 71,521,258-71,532,377 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 4 domains and features, is associated with 4707 variant alleles and maps to 403 oligo probes.

Gene

This transcript is a product of gene ENSG00000132465.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000254801.4	IGJ-001	1438	159aa	ENSP00000254801.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3545	C9JA05 P01591	NM_144646.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000510437.1	IGJ-005	640	159aa	ENSP00000426687.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3545	C9JA05 P01591	-	-
ENST00000510614.1	IGJ-006	533	157aa	ENSP00000427112.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RD17	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000543780.1	IGJ-201	528	175aa	ENSP00000440066.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RHJ6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000391614.3	IGJ-004	508	157aa	ENSP00000426045.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RHJ6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000470866.1	IGJ-002	275	70aa	ENSP00000417560.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JA05	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,438 bps, Translation length: 159 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P01591

CCDS

This transcript is a member of the Human CCDS set: CCDS3545

Version

ENST00000254801.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252160 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000254801.4 IGJ-001

Summary