Transcript: ENST00000575979.1 RAP1GAP2-004

Description

RAP1 GTPase activating protein 2 [Source:HGNC Symbol;Acc:29176]

Gene Synonyms

GARNL4, KIAA1039, RAP1GA2, RAP1GA3

Location

Chromosome 17: 2,911,395-2,929,542 forward strand.

About this transcript

This transcript has 4 exons, is associated with 8415 variant alleles and maps to 106 oligo probes.

Gene

This transcript is a product of gene ENSG00000132359.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000254695.8	RAP1GAP2-001	6661	730aa	ENSP00000254695.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45573	Q684P5	NM_015085.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366401.4	RAP1GAP2-002	6616	715aa	ENSP00000389824.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45574	Q684P5	NM_001100398.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540393.2	RAP1GAP2-003	3218	711aa	ENSP00000439688.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q684P5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542807.1	RAP1GAP2-201	3110	730aa	ENSP00000444890.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45573	Q684P5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000574709.1	RAP1GAP2-006	658	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000574515.1	RAP1GAP2-007	606	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000571555.1	RAP1GAP2-010	4658	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000575979.1	RAP1GAP2-004	543	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 543 bps,

Version

ENST00000575979.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000438368 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000575979.1 RAP1GAP2-004

Summary