Transcript: ENST00000342680.5 C19orf12-005

Description

chromosome 19 open reading frame 12 [Source:HGNC Symbol;Acc:25443]

Gene Synonyms

DKFZP762D096, MGC10922, NBIA3, NBIA4, SPG43

Location

Chromosome 19: 30,193,749-30,206,182 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 4 domains and features, is associated with 5685 variant alleles and maps to 188 oligo probes.

Gene

This transcript is a product of gene ENSG00000131943.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000392278.2	C19orf12-003	895	152aa	ENSP00000376103.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42542	K7EPS8 Q9NSK7	NM_001031726.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000323670.9	C19orf12-001	2464	141aa	ENSP00000313332.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12418	K7EPS8 Q9NSK7	NM_031448.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392276.1	C19orf12-002	1912	77aa	ENSP00000376102.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NSK7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000592153.1	C19orf12-009	1504	107aa	ENSP00000467117.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59373	Q9NSK7	NM_001256046.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000591243.1	C19orf12-010	546	106aa	ENSP00000467516.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EPS8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000342680.5	C19orf12-005	578	68aa	ENSP00000345497.5	Nonsense mediated decay		F8W6J3	-	-
ENST00000392275.1	C19orf12-004	1188	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 578 bps, Translation length: 68 residues

Version

ENST00000342680.5

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000446915 (version 1)

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Transcript: ENST00000342680.5 C19orf12-005

Summary