Transcript: ENST00000565383.1 TRAF7-004

Description

TNF receptor-associated factor 7, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:20456]

Gene Synonyms

DKFZp586I021, MGC7807, RFWD1, RNF119

Location

Chromosome 16: 2,205,699-2,218,516 forward strand.

About this transcript

This transcript has 4 exons, is associated with 8398 variant alleles and maps to 119 oligo probes.

Gene

This transcript is a product of gene ENSG00000131653.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000326181.6	TRAF7-001	3700	670aa	ENSP00000318944.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10461	D3DU86 H3BR17 Q6Q0C0	NM_032271.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000567645.1	TRAF7-005	737	147aa	ENSP00000456034.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BR17	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000564067.1	TRAF7-006	874	54aa	ENSP00000457735.1	Nonsense mediated decay		H3BUP4	-	-
ENST00000565383.1	TRAF7-004	799	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000567653.1	TRAF7-003	666	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000569686.1	TRAF7-007	586	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000570169.1	TRAF7-008	411	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 799 bps,

Version

ENST00000565383.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000434893 (version 1)

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Transcript: ENST00000565383.1 TRAF7-004

Summary