Transcript: ENST00000252599.4 COLGALT1-001

Description

collagen beta(1-O)galactosyltransferase 1 [Source:HGNC Symbol;Acc:26182]

Gene Synonyms

FLJ22329, GLT25D1

Location

Chromosome 19: 17,666,403-17,693,968 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 11 domains and features, is associated with 14045 variant alleles and maps to 572 oligo probes.

Gene

This transcript is a product of gene ENSG00000130309.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000252599.4	COLGALT1-001	3704	622aa	ENSP00000252599.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12363	B3KQ10 M0QYH0 Q8NBJ5 Q8WUI9	NM_024656.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000597147.1	COLGALT1-007	654	218aa	ENSP00000468947.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000600474.1	COLGALT1-005	552	138aa	ENSP00000469817.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QYH0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000601354.1	COLGALT1-006	546	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000593832.1	COLGALT1-004	2941	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000597075.1	COLGALT1-008	737	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 3,704 bps, Translation length: 622 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NBJ5

CCDS

This transcript is a member of the Human CCDS set: CCDS12363

Version

ENST00000252599.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000464216 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000252599.4 COLGALT1-001

Summary