Transcript: ENST00000446996.1 APOE-002

Description

apolipoprotein E [Source:HGNC Symbol;Acc:613]

Gene Synonyms

AD2, LDLCQ5, LPG

Location

Chromosome 19: 45,409,048-45,412,201 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 10 domains and features, is associated with 1854 variant alleles and maps to 395 oligo probes.

Gene

This transcript is a product of gene ENSG00000130203.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000252486.4	APOE-001	1208	317aa	ENSP00000252486.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12647	E7ERP7 E9PEV4 J9ZVQ3 P02649 Q6LA97 Q6LBZ1	NM_000041.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000425718.1	APOE-005	923	219aa	ENSP00000410423.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ERP7 E9PEV4 Q6LA97	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000434152.1	APOE-004	864	269aa	ENSP00000413653.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ERP7 E9PEV4 H0Y7L5 Q6LA97 Q6LBZ1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000446996.1	APOE-002	737	216aa	ENSP00000413135.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PEV4 Q6LA97	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000485628.2	APOE-003	771	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 737 bps, Translation length: 216 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000446996.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000317617 (version 1)

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Transcript: ENST00000446996.1 APOE-002

Summary