Transcript: ENST00000467452.1 TMEM8A-004

Description

transmembrane protein 8A [Source:HGNC Symbol;Acc:17205]

Gene Synonyms

M83, TMEM6, TMEM8

Location

Chromosome 16: 424,005-425,075 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 764 variant alleles and maps to 143 oligo probes.

Gene

This transcript is a product of gene ENSG00000129925.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000431232.2	TMEM8A-001	3691	771aa	ENSP00000401338.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10407	C9J8D7 K4DI83 Q9HCN3	NM_021259.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000250930.3	TMEM8A-002	2346	578aa	ENSP00000250930.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J8D7 K4DI83	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448854.1	TMEM8A-006	858	243aa	ENSP00000401931.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C1S0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000424078.1	TMEM8A-005	844	239aa	ENSP00000397620.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000427313.1	TMEM8A-008	587	21aa	ENSP00000410987.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J8D7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000476735.1	TMEM8A-007	801	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467452.1	TMEM8A-004	646	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475348.1	TMEM8A-003	639	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 646 bps,

Version

ENST00000467452.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000139522 (version 1)

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Transcript: ENST00000467452.1 TMEM8A-004

Summary