Transcript: ENST00000249923.3 COPB1-001

Description

coatomer protein complex, subunit beta 1 [Source:HGNC Symbol;Acc:2231]

Gene Synonyms

COPB

Location

Chromosome 11: 14,479,052-14,521,398 reverse strand.

About this transcript

This transcript has 22 exons, is annotated with 12 domains and features, is associated with 18743 variant alleles and maps to 721 oligo probes.

Gene

This transcript is a product of gene ENSG00000129083.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000249923.3	COPB1-001	3481	953aa	ENSP00000249923.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7815	E9PKQ1 E9PP63 P53618	NM_016451.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000439561.2	COPB1-002	3382	953aa	ENSP00000397873.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7815	E9PKQ1 E9PP63 P53618	NM_001144062.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534234.1	COPB1-003	1584	485aa	ENSP00000436383.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PKQ1 E9PP63 E9PP73	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000529866.1	COPB1-012	729	137aa	ENSP00000431530.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PKQ1 E9PP63	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000534771.1	COPB1-004	576	132aa	ENSP00000436401.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PP63	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000526191.1	COPB1-011	697	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000529210.1	COPB1-005	607	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000525214.1	COPB1-009	566	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000533096.1	COPB1-013	547	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000533533.1	COPB1-006	537	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000532088.1	COPB1-010	510	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000526527.1	COPB1-008	438	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 22, Coding exons: 21, Transcript length: 3,481 bps, Translation length: 953 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P53618

CCDS

This transcript is a member of the Human CCDS set: CCDS7815

Version

ENST00000249923.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000386410 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000249923.3 COPB1-001

Summary