Transcript: ENST00000445866.2 SGCE-003

Description

sarcoglycan, epsilon [Source:HGNC Symbol;Acc:10808]

Gene Synonyms

DYT11, ESG

Location

Chromosome 7: 94,214,560-94,285,436 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 7 domains and features, is associated with 27849 variant alleles and maps to 438 oligo probes.

Gene

This transcript is a product of gene ENSG00000127990.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000445866.2	SGCE-003	1666	462aa	ENSP00000398930.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47643	G5E9K6	NM_001099401.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415788.2	SGCE-008	1871	471aa	ENSP00000405313.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z2R4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000265735.7	SGCE-001	1694	437aa	ENSP00000265735.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5637	O43556	NM_003919.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000447873.1	SGCE-005	1597	428aa	ENSP00000388734.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JR67	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000437425.2	SGCE-002	1508	396aa	ENSP00000394061.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PEH6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428696.2	SGCE-004	1409	451aa	ENSP00000397536.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47642	-	NM_001099400.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522045.1	SGCE-011	408	41aa	ENSP00000431080.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YC75	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000450385.1	SGCE-007	815	43aa	ENSP00000398344.1	Nonsense mediated decay		C9J4J9	-	-
ENST00000425444.1	SGCE-006	597	43aa	ENSP00000391892.1	Nonsense mediated decay		C9J4J9	-	-
ENST00000472326.2	SGCE-010	453	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462731.1	SGCE-009	351	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 1,666 bps, Translation length: 462 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS47643

Version

ENST00000445866.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000340756 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000445866.2 SGCE-003

Summary