Transcript: ENST00000396992.3 CFP-001

Description

complement factor properdin [Source:HGNC Symbol;Acc:8864]

Gene Synonyms

BFD, PFC, PFD, PROPERDIN

Location

Chromosome X: 47,483,613-47,489,364 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 38 domains and features, is associated with 2148 variant alleles and maps to 402 oligo probes.

Gene

This transcript is a product of gene ENSG00000126759.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000247153.3	CFP-201	1713	469aa	ENSP00000247153.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14282	C9J7V5 E9PAQ1 P27918	NM_002621.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396992.3	CFP-001	1592	469aa	ENSP00000380189.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14282	C9J7V5 E9PAQ1 P27918	NM_001145252.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000377005.2	CFP-002	1435	415aa	ENSP00000366204.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J7V5 E9PAQ1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000469388.1	CFP-006	928	167aa	ENSP00000418258.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J7V5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000480317.1	CFP-005	569	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485991.1	CFP-003	4040	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478222.1	CFP-004	593	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,592 bps, Translation length: 469 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P27918

CCDS

This transcript is a member of the Human CCDS set: CCDS14282

Version

ENST00000396992.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000056435 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000396992.3 CFP-001

Summary