Transcript: ENST00000467446.2 NSRP1-009

Description

nuclear speckle splicing regulatory protein 1 [Source:HGNC Symbol;Acc:25305]

Gene Synonyms

CCDC55, DKFZP434K1421, HSPC095, NSRP70, NSrp70

Location

Chromosome 17: 28,444,172-28,499,610 forward strand.

About this transcript

This transcript has 5 exons, is associated with 24025 variant alleles and maps to 170 oligo probes.

Gene

This transcript is a product of gene ENSG00000126653.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000247026.5	NSRP1-001	2541	558aa	ENSP00000247026.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11255	K7EK40 K7EMD8 K7ERM9 Q9H0G5	NM_032141.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000580103.2	NSRP1-008	774	157aa	ENSP00000468327.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EK40 K7EMD8 K7ERM9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000585881.1	NSRP1-003	582	64aa	ENSP00000465442.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EK40	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000479218.2	NSRP1-007	540	41aa	ENSP00000466640.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QS82	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588614.1	NSRP1-014	497	104aa	ENSP00000466463.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EK40 K7EMD8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000584423.1	NSRP1-006	482	92aa	ENSP00000464237.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QRI6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394826.4	NSRP1-005	1800	50aa	ENSP00000378303.4	Nonsense mediated decay		H7BYM1	-	-
ENST00000475652.1	NSRP1-002	1242	41aa	ENSP00000464569.1	Nonsense mediated decay		J3QS82	-	-
ENST00000584154.1	NSRP1-010	583	42aa	ENSP00000462820.1	Nonsense mediated decay		J3KT62	-	-
ENST00000584317.1	NSRP1-013	564	74aa	ENSP00000463722.1	Nonsense mediated decay		J3QLV5	-	-
ENST00000589608.1	NSRP1-016	368	68aa	ENSP00000467856.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000540900.3	NSRP1-004	2057	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000583301.1	NSRP1-012	684	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000577289.2	NSRP1-015	562	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000581048.1	NSRP1-011	547	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467446.2	NSRP1-009	548	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 548 bps,

Version

ENST00000467446.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000447922 (version 1)

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Transcript: ENST00000467446.2 NSRP1-009

Summary