Transcript: ENST00000317868.4 ATG4C-001

Description

autophagy related 4C, cysteine peptidase [Source:HGNC Symbol;Acc:16040]

Gene Synonyms

APG4-C, APG4C, AUTL1, AUTL3, FLJ14867

Location

Chromosome 1: 63,249,806-63,331,184 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 5 domains and features, is associated with 31672 variant alleles and maps to 519 oligo probes.

Gene

This transcript is a product of gene ENSG00000125703.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000317868.4	ATG4C-001	2938	458aa	ENSP00000322159.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS623	A6NGQ4 C9JC51 Q96DT6	NM_032852.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371120.3	ATG4C-002	2890	458aa	ENSP00000360161.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS623	A6NGQ4 C9JC51 Q96DT6	NM_178221.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371118.1	ATG4C-004	665	189aa	ENSP00000360159.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NGQ4 C9JC51	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000443289.1	ATG4C-003	603	151aa	ENSP00000396614.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JC51	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000414558.2	ATG4C-005	464	110aa	ENSP00000391820.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 2,938 bps, Translation length: 458 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96DT6

CCDS

This transcript is a member of the Human CCDS set: CCDS623

Version

ENST00000317868.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000025332 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000317868.4 ATG4C-001

Summary