Transcript: ENST00000552487.1 ATF1-004

Description

activating transcription factor 1 [Source:HGNC Symbol;Acc:783]

Gene Synonyms

EWS-ATF1, FUS/ATF-1, TREB36

Location

Chromosome 12: 51,158,292-51,208,151 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 21241 variant alleles and maps to 219 oligo probes.

Gene

This transcript is a product of gene ENSG00000123268.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262053.3	ATF1-001	2181	271aa	ENSP00000262053.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8803	B4DRF9 F8VS03 F8VYN3 P18846	NM_005171.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539132.1	ATF1-201	970	136aa	ENSP00000438403.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DRF9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000552487.1	ATF1-004	745	200aa	ENSP00000448921.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VS03 F8VYN3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000552510.1	ATF1-003	549	170aa	ENSP00000448592.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VS03	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000551831.1	ATF1-002	970	55aa	ENSP00000448987.1	Nonsense mediated decay		F8VYE5	-	-
ENST00000549612.1	ATF1-005	568	77aa	ENSP00000448421.1	Nonsense mediated decay		F8VRN2	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 745 bps, Translation length: 200 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000552487.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000404287 (version 1)

Annotation Attributes

dotter confirmed [Definitions]

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Transcript: ENST00000552487.1 ATF1-004

Summary