Transcript: ENST00000409747.1 CBX3-003

Description

chromobox homolog 3 [Source:HGNC Symbol;Acc:1553]

Gene Synonyms

CCDC32, HECH, HP1-GAMMA, HP1Hs-gamma

Location

Chromosome 7: 26,241,385-26,252,976 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 7 domains and features, is associated with 7611 variant alleles and maps to 566 oligo probes.

Gene

This transcript is a product of gene ENSG00000122565.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000337620.4	CBX3-001	2128	183aa	ENSP00000336687.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5398	A4D177 C9JMM0 Q13185	NM_007276.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396386.2	CBX3-002	1857	183aa	ENSP00000379670.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5398	A4D177 C9JMM0 Q13185	NM_016587.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409747.1	CBX3-003	1717	101aa	ENSP00000387348.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZ43	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456948.1	CBX3-004	1068	62aa	ENSP00000408672.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JMM0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000462165.2	CBX3-006	949	107aa	ENSP00000473748.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R2Y4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000497498.1	CBX3-008	922	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481057.1	CBX3-005	860	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481300.1	CBX3-007	559	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 1,717 bps, Translation length: 101 residues

Version

ENST00000409747.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000327972 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000409747.1 CBX3-003

Summary