Transcript: ENST00000340169.2 LIAS-008

Description

lipoic acid synthetase [Source:HGNC Symbol;Acc:16429]

Gene Synonyms

LAS, LIP1, LS, PDHLD

Location

Chromosome 4: 39,460,620-39,479,204 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 9 domains and features, is associated with 7931 variant alleles and maps to 464 oligo probes.

Gene

This transcript is a product of gene ENSG00000121897.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261434.3	LIAS-001	1775	372aa	ENSP00000261434.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3453	O43766	NM_006859.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000340169.2	LIAS-008	1594	322aa	ENSP00000340676.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3454	O43766	NM_194451.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381846.1	LIAS-002	1542	329aa	ENSP00000371270.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63950	C9JCF6	NM_001278590.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513731.1	LIAS-006	821	242aa	ENSP00000425580.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RCP8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000515061.1	LIAS-007	662	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000424936.2	LIAS-004	1011	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000509519.1	LIAS-003	1005	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,594 bps, Translation length: 322 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43766

CCDS

This transcript is a member of the Human CCDS set: CCDS3454

Version

ENST00000340169.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000361039 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000340169.2 LIAS-008

Summary