Transcript: ENST00000315091.3 TARDBP-003

Description

TAR DNA binding protein [Source:HGNC Symbol;Acc:11571]

Gene Synonyms

ALS10, TDP-43, TDP43

Location

Chromosome 1: 11,073,773-11,084,240 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 12 domains and features, is associated with 5224 variant alleles and maps to 557 oligo probes.

Gene

This transcript is a product of gene ENSG00000120948.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000240185.3	TARDBP-001	2748	414aa	ENSP00000240185.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS122	K7EJM5 Q13148	NM_007375.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000315091.3	TARDBP-003	1835	295aa	ENSP00000313129.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AKP7 K7EJM5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000439080.2	TARDBP-201	1357	298aa	ENSP00000404666.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DJ45	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000476201.1	TARDBP-005	767	222aa	ENSP00000466842.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EN94	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000473118.1	TARDBP-004	688	201aa	ENSP00000465240.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJM5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000473869.1	TARDBP-002	1946	298aa	ENSP00000432132.1	Nonsense mediated decay		G3V162 K7EJM5	-	-
ENST00000472476.1	TARDBP-006	929	80aa	ENSP00000465080.1	Nonsense mediated decay		K7EJ99	-	-
ENST00000496840.1	TARDBP-008	692	16aa	ENSP00000467020.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477447.2	TARDBP-007	311	65aa	ENSP00000465888.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000480464.1	TARDBP-009	491	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,835 bps, Translation length: 295 residues

Version

ENST00000315091.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000006065 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000315091.3 TARDBP-003

Summary