Transcript: ENST00000314358.5 KDM3B-001

Description

lysine (K)-specific demethylase 3B [Source:HGNC Symbol;Acc:1337]

Gene Synonyms

5qNCA, C5orf7, JHDM2B, JMJD1B, KIAA1082, NET22

Location

Chromosome 5: 137,688,285-137,772,716 forward strand.

About this transcript

This transcript has 24 exons, is annotated with 14 domains and features, is associated with 36402 variant alleles and maps to 897 oligo probes.

Gene

This transcript is a product of gene ENSG00000120733.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000314358.5	KDM3B-001	6813	1761aa	ENSP00000326563.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34242	F5H275 Q7LBC6	NM_016604.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394866.1	KDM3B-201	5581	1417aa	ENSP00000378335.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H275 Q7LBC6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542866.1	KDM3B-202	3034	793aa	ENSP00000439462.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H275	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000510866.1	KDM3B-002	6324	274aa	ENSP00000425186.1	Nonsense mediated decay		H0Y9V5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000507996.1	KDM3B-004	3034	20aa	ENSP00000423012.1	Nonsense mediated decay		H0Y946	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000508386.1	KDM3B-009	540	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505756.1	KDM3B-007	654	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512928.1	KDM3B-005	627	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000509468.1	KDM3B-008	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000504095.1	KDM3B-006	555	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 24, Coding exons: 24, Transcript length: 6,813 bps, Translation length: 1,761 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7LBC6

CCDS

This transcript is a member of the Human CCDS set: CCDS34242

Version

ENST00000314358.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000373597 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000314358.5 KDM3B-001

Summary