Transcript: ENST00000512858.1 PKD2-004

Description

polycystic kidney disease 2 (autosomal dominant) [Source:HGNC Symbol;Acc:9009]

Gene Synonyms

APKD2, PC2, PKD4, Pc-2, TRPP2

Location

Chromosome 4: 88,973,262-88,997,015 forward strand.

About this transcript

This transcript has 7 exons, is associated with 10638 variant alleles and maps to 306 oligo probes.

Gene

This transcript is a product of gene ENSG00000118762.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000237596.2	PKD2-001	5056	968aa	ENSP00000237596.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3627	B4DE45 B4DFN3 B7Z2D4 Q13563 Q9UEU6	NM_000297.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508588.1	PKD2-002	1720	386aa	ENSP00000427131.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DE45 B4DFN3 B7Z2D4 Q9UEU6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000502363.1	PKD2-005	1222	386aa	ENSP00000425289.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DE45 B4DFN3 B7Z2D4 Q9UEU6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511337.1	PKD2-003	1362	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000512858.1	PKD2-004	1554	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000506367.1	PKD2-007	693	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000506727.1	PKD2-006	550	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 1,554 bps,

Version

ENST00000512858.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000363255 (version 1)

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Transcript: ENST00000512858.1 PKD2-004

Summary