Transcript: ENST00000503945.2 MED28-002

Description

mediator complex subunit 28 [Source:HGNC Symbol;Acc:24628]

Gene Synonyms

1500003D12Rik, DKFZP434N185, EG1, magicin

Location

Chromosome 4: 17,616,287-17,629,793 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 4 domains and features, is associated with 6980 variant alleles and maps to 202 oligo probes.

Gene

This transcript is a product of gene ENSG00000118579.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000237380.7	MED28-001	10868	178aa	ENSP00000237380.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33963	Q9H204	NM_025205.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000503945.2	MED28-002	879	179aa	ENSP00000426529.1	Nonsense mediated decay		H0YAA8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000499786.4	MED28-004	606	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000506409.1	MED28-003	347	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 879 bps, Translation length: 179 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000503945.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs2315552, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HapMap-HCB.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000360056 (version 2)

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Transcript: ENST00000503945.2 MED28-002

Summary