Transcript: ENST00000236671.2 CTSD-001

Description

cathepsin D [Source:HGNC Symbol;Acc:2529]

Gene Synonyms

CLN10, CPSD, HEL-S-130P

Location

Chromosome 11: 1,773,982-1,785,222 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 16 domains and features, is associated with 6989 variant alleles and maps to 514 oligo probes.

Gene

This transcript is a product of gene ENSG00000117984.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000236671.2	CTSD-001	2123	412aa	ENSP00000236671.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7725	F8W787 F8WD96 P07339	NM_001909.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000438213.1	CTSD-005	946	299aa	ENSP00000415036.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JH19 F8W787	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000367196.3	CTSD-002	907	199aa	ENSP00000356164.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W787	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000429746.1	CTSD-004	690	189aa	ENSP00000402586.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C1V0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000433655.1	CTSD-006	2006	276aa	ENSP00000404902.1	Nonsense mediated decay		F8W787 F8WD96	-	-
ENST00000497544.1	CTSD-003	777	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,123 bps, Translation length: 412 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P07339

CCDS

This transcript is a member of the Human CCDS set: CCDS7725

Version

ENST00000236671.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000104272 (version 5)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000236671.2 CTSD-001

Summary