Transcript: ENST00000561312.1 MESDC2-002

Description

mesoderm development candidate 2 [Source:HGNC Symbol;Acc:13520]

Gene Synonyms

BOCA, KIAA0081, MESD

Location

About this transcript

This transcript has 5 exons, is annotated with 8 domains and features, is associated with 18753 variant alleles and maps to 366 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261758.4	MESDC2-001	4257	234aa	ENSP00000261758.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32308	Q14696	NM_015154.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561312.1	MESDC2-002	2941	234aa	ENSP00000453430.1	Nonsense mediated decay	CCDS32308	Q14696	-	-
ENST00000422879.3	MESDC2-003	1392	138aa	ENSP00000403839.3	Nonsense mediated decay		B4DW84	-	-
ENST00000559537.1	MESDC2-006	539	80aa	ENSP00000453220.1	Nonsense mediated decay		H0YLI4	-	-
ENST00000560244.1	MESDC2-005	981	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000560189.1	MESDC2-004	936	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 2,941 bps, Translation length: 234 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q14696

CCDS

This transcript is a member of the Human CCDS set: CCDS32308

Version

ENST00000561312.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000417674 (version 1)