Transcript: ENST00000366639.4 TSNAX-001

Description

translin-associated factor X [Source:HGNC Symbol;Acc:12380]

Gene Synonyms

TRAX

Location

About this transcript

This transcript has 6 exons, is annotated with 6 domains and features, is associated with 17033 variant alleles and maps to 413 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000366639.4	TSNAX-001	2650	290aa	ENSP00000355599.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1596	Q99598 Q9NRI2	NM_005999.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413309.2	TSNAX-003	646	163aa	ENSP00000397537.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VVQ1 Q9NRI2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000602825.1	TSNAX-005	585	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475168.1	TSNAX-002	5629	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476913.1	TSNAX-004	581	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,650 bps, Translation length: 290 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q99598

CCDS

This transcript is a member of the Human CCDS set: CCDS1596

Version

ENST00000366639.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000095267 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.