Transcript: ENST00000471440.2 CFHR3-005

Description

complement factor H-related 3 [Source:HGNC Symbol;Acc:16980]

Gene Synonyms

CFHL3, DOWN16, FHR-3, FHR3, HLF4

Location

About this transcript

This transcript has 5 exons, is annotated with 17 domains and features, is associated with 7242 variant alleles and maps to 347 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000367425.4	CFHR3-001	1645	330aa	ENSP00000356395.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30958	Q02985	NM_021023.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000471440.2	CFHR3-005	1965	232aa	ENSP00000436258.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6NSD3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000391985.3	CFHR3-006	1043	269aa	ENSP00000375845.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53453	Q02985	NM_001166624.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367427.3	CFHR3-003	1242	232aa	ENSP00000356397.3	Nonsense mediated decay		Q6NSD3	-	-
ENST00000461558.2	CFHR3-004	785	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,965 bps, Translation length: 232 residues

Version

ENST00000471440.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000386056 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.