Transcript: ENST00000475121.1 CHD5-003

Description

chromodomain helicase DNA binding protein 5 [Source:HGNC Symbol;Acc:16816]

Gene Synonyms

CHD-5, KIAA0444

Location

Chromosome 1: 6,165,141-6,166,832 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 1 domain and feature, is associated with 962 variant alleles and maps to 103 oligo probes.

Gene

This transcript is a product of gene ENSG00000116254.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262450.3	CHD5-001	9646	1954aa	ENSP00000262450.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS57	Q8TDI0	NM_015557.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378021.1	CHD5-201	9531	808aa	ENSP00000367260.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5TG85	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000475121.1	CHD5-003	558	90aa	ENSP00000466440.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000496404.1	CHD5-002	4966	1225aa	ENSP00000433676.1	Nonsense mediated decay		F2Z2R5	-	-
ENST00000462991.1	CHD5-004	4396	1060aa	ENSP00000466706.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000377999.1	CHD5-005	3044	110aa	ENSP00000367238.2	Nonsense mediated decay		F6T542	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000491020.1	CHD5-006	646	127aa	ENSP00000468624.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 558 bps, Translation length: 90 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000475121.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000002825 (version 2)

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Transcript: ENST00000475121.1 CHD5-003

Summary