Transcript: ENST00000553786.1 PRRX1-008

Description

paired related homeobox 1 [Source:HGNC Symbol;Acc:9142]

Gene Synonyms

AGOTC, PHOX1, PMX1, PRX-1, PRX1

Location

Chromosome 1: 170,631,869-170,689,044 forward strand.

About this transcript

This transcript has 3 exons, is associated with 26540 variant alleles and maps to 60 oligo probes.

Gene

This transcript is a product of gene ENSG00000116132.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000239461.6	PRRX1-002	4284	245aa	ENSP00000239461.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1290	P54821	NM_022716.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000497230.2	PRRX1-005	3501	200aa	ENSP00000450762.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2N3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367760.3	PRRX1-001	2217	217aa	ENSP00000356734.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1291	G3V2N3 P54821	NM_006902.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000476867.2	PRRX1-003	586	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000553786.1	PRRX1-008	529	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495280.1	PRRX1-004	464	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496573.1	PRRX1-006	362	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485529.1	PRRX1-007	329	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 529 bps,

Version

ENST00000553786.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000411902 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000553786.1 PRRX1-008

Summary