Transcript: ENST00000497230.2 PRRX1-005

Description

paired related homeobox 1 [Source:HGNC Symbol;Acc:9142]

Gene Synonyms

AGOTC, PHOX1, PMX1, PRX-1, PRX1

Location

Chromosome 1: 170,633,078-170,698,162 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 9 domains and features, is associated with 29648 variant alleles and maps to 298 oligo probes.

Gene

This transcript is a product of gene ENSG00000116132.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000239461.6	PRRX1-002	4284	245aa	ENSP00000239461.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1290	P54821	NM_022716.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000497230.2	PRRX1-005	3501	200aa	ENSP00000450762.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2N3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367760.3	PRRX1-001	2217	217aa	ENSP00000356734.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1291	G3V2N3 P54821	NM_006902.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000476867.2	PRRX1-003	586	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000553786.1	PRRX1-008	529	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495280.1	PRRX1-004	464	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496573.1	PRRX1-006	362	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485529.1	PRRX1-007	329	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 3,501 bps, Translation length: 200 residues

Version

ENST00000497230.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000085437 (version 2)

Annotation Attributes

retained intron final [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000497230.2 PRRX1-005

Summary