Transcript: ENST00000438570.1 SMYD1-003

Description

SET and MYND domain containing 1 [Source:HGNC Symbol;Acc:20986]

Gene Synonyms

BOP, KMT3D, ZMYND18, ZMYND22

Location

About this transcript

This transcript has 3 exons, is annotated with 6 domains and features, is associated with 19543 variant alleles and maps to 71 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000419482.2	SMYD1-001	4433	490aa	ENSP00000393453.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33240	Q5GJ33 Q8NB12	NM_198274.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444564.2	SMYD1-002	1816	477aa	ENSP00000407888.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PHG3 Q5GJ32	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000438570.1	SMYD1-003	680	103aa	ENSP00000387482.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JUP3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000468008.1	SMYD1-004	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 680 bps, Translation length: 103 residues

Version

ENST00000438570.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000338231 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.