Transcript: ENST00000434524.1 LMAN2L-006

Description

lectin, mannose-binding 2-like [Source:HGNC Symbol;Acc:19263]

Gene Synonyms

DKFZp564L2423, VIPL

Location

Chromosome 2: 97,371,712-97,405,778 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 8 domains and features, is associated with 14326 variant alleles and maps to 523 oligo probes.

Gene

This transcript is a product of gene ENSG00000114988.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000377079.4	LMAN2L-007	2020	359aa	ENSP00000366280.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46365	B4DI83 Q9H0V9	NM_001142292.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000264963.4	LMAN2L-001	2397	348aa	ENSP00000264963.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2023	F5GWW9 Q9H0V9	NM_030805.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000426463.2	LMAN2L-201	1400	214aa	ENSP00000396391.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DSH3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537039.1	LMAN2L-203	1163	210aa	ENSP00000441701.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GWW9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534882.1	LMAN2L-202	1008	203aa	ENSP00000438501.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DVH1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000434524.1	LMAN2L-006	2410	107aa	ENSP00000413533.1	Nonsense mediated decay		F8WEK5	-	-
ENST00000446780.1	LMAN2L-004	1400	169aa	ENSP00000417037.1	Nonsense mediated decay		F8WB07	-	-
ENST00000434865.1	LMAN2L-005	1163	123aa	ENSP00000387717.1	Nonsense mediated decay		F2Z2L5	-	-
ENST00000449221.1	LMAN2L-002	1061	123aa	ENSP00000390197.1	Nonsense mediated decay		F2Z2L5	-	-
ENST00000440610.1	LMAN2L-003	1008	111aa	ENSP00000403283.1	Nonsense mediated decay		F8WCX4	-	-
ENST00000480869.1	LMAN2L-008	569	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474494.1	LMAN2L-009	322	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 3, Transcript length: 2,410 bps, Translation length: 107 residues

Version

ENST00000434524.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000339026 (version 1)

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Transcript: ENST00000434524.1 LMAN2L-006

Summary