Transcript: ENST00000393409.2 PLXNA1-001

Description

plexin A1 [Source:HGNC Symbol;Acc:9099]

Gene Synonyms

NOV, NOVP, PLEXIN-A1, PLXN1

Location

About this transcript

This transcript has 31 exons, is annotated with 47 domains and features, is associated with 24263 variant alleles and maps to 1249 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393409.2	PLXNA1-001	9066	1896aa	ENSP00000377061.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33847	B3KY38 B4DE20 F8VSZ4 Q9NSM6 Q9UIW2	NM_032242.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000251772.4	PLXNA1-201	9066	1873aa	ENSP00000251772.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KY38 B4DE20 F8VSZ4 Q9NSM6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000505278.1	PLXNA1-004	536	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000503234.1	PLXNA1-002	4446	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000503363.1	PLXNA1-003	410	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 31, Coding exons: 31, Transcript length: 9,066 bps, Translation length: 1,896 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UIW2

CCDS

This transcript is a member of the Human CCDS set: CCDS33847

Version

ENST00000393409.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000356451 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.