Transcript: ENST00000490574.1 TFG-003

Description

TRK-fused gene [Source:HGNC Symbol;Acc:11758]

Gene Synonyms

FLJ36137, HMSNP, SPG57, TF6, TRKT3

Location

Chromosome 3: 100,428,222-100,467,771 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 11 domains and features, is associated with 17577 variant alleles and maps to 320 oligo probes.

Gene

This transcript is a product of gene ENSG00000114354.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000240851.4	TFG-001	1978	400aa	ENSP00000240851.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2939	C9JJP5 C9JTY3 C9JUE0 Q92734	NM_006070.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000476228.1	TFG-004	1783	396aa	ENSP00000417952.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56266	C9JJP5 C9JTY3 C9JUE0 Q7Z427 Q92734	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000418917.2	TFG-002	1716	396aa	ENSP00000397182.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56266	C9JJP5 C9JTY3 C9JUE0 Q7Z427 Q92734	NM_001007565.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000490574.1	TFG-003	1696	400aa	ENSP00000419960.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2939	C9JJP5 C9JTY3 C9JUE0 Q92734	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000487505.1	TFG-007	913	181aa	ENSP00000420797.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JJP5 C9JTY3 C9JUE0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000479672.1	TFG-006	776	128aa	ENSP00000419559.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JTY3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000463568.1	TFG-008	723	157aa	ENSP00000419504.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JTY3 C9JUE0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000481203.1	TFG-005	3271	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 1,696 bps, Translation length: 400 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q92734

CCDS

This transcript is a member of the Human CCDS set: CCDS2939

Version

ENST00000490574.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000353244 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000490574.1 TFG-003

Summary