Transcript: ENST00000477393.1 RNF7-004

Description

ring finger protein 7 [Source:HGNC Symbol;Acc:10070]

Gene Synonyms

CKBBP1, RBX2, ROC2, SAG

Location

Chromosome 3: 141,457,161-141,464,359 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 6 domains and features, is associated with 3022 variant alleles and maps to 494 oligo probes.

Gene

This transcript is a product of gene ENSG00000114125.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000273480.3	RNF7-001	2763	113aa	ENSP00000273480.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3118	Q9UBF6	NM_183237.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393000.3	RNF7-002	805	90aa	ENSP00000376725.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43158	Q9UBF6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000480908.1	RNF7-007	782	97aa	ENSP00000419084.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56283	Q9UBF6	NM_001201370.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000477012.1	RNF7-003	1036	108aa	ENSP00000419339.1	Nonsense mediated decay		Q9UBF6	-	-
ENST00000477393.1	RNF7-004	862	68aa	ENSP00000419979.1	Nonsense mediated decay		F8WEU8	-	-
ENST00000486377.1	RNF7-005	418	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498828.1	RNF7-006	652	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 862 bps, Translation length: 68 residues

Version

ENST00000477393.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000280605 (version 2)

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Transcript: ENST00000477393.1 RNF7-004

Summary