Transcript: ENST00000493990.1 ARL6-002

Description

ADP-ribosylation factor-like 6 [Source:HGNC Symbol;Acc:13210]

Gene Synonyms

BBS3, RP55

Location

Chromosome 3: 97,483,365-97,519,953 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 13 domains and features, is associated with 14048 variant alleles and maps to 481 oligo probes.

Gene

This transcript is a product of gene ENSG00000113966.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000463745.1	ARL6-001	1518	186aa	ENSP00000419619.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2928	C9IZ13 Q9H0F7	NM_001278293.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000335979.2	ARL6-201	1390	186aa	ENSP00000337722.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2928	C9IZ13 Q9H0F7	NM_032146.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394206.1	ARL6-202	1350	186aa	ENSP00000377756.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2928	C9IZ13 Q9H0F7	NM_177976.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000462412.1	ARL6-004	894	121aa	ENSP00000418740.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IZ13	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000476753.1	ARL6-006	675	54aa	ENSP00000419934.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000493990.1	ARL6-002	1705	186aa	ENSP00000418057.1	Nonsense mediated decay	CCDS2928	C9IZ13 Q9H0F7	-	-
ENST00000496713.1	ARL6-003	851	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494363.1	ARL6-005	553	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 7, Transcript length: 1,705 bps, Translation length: 186 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9H0F7

CCDS

This transcript is a member of the Human CCDS set: CCDS2928

Version

ENST00000493990.1

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000353757 (version 1)

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Transcript: ENST00000493990.1 ARL6-002

Summary