Transcript: ENST00000495833.1 PPP2CA-003

Description

protein phosphatase 2, catalytic subunit, alpha isozyme [Source:HGNC Symbol;Acc:9299]

Gene Synonyms

PP2Ac, PP2CA, PP2Calpha, RP-C

Location

Chromosome 5: 133,536,665-133,538,176 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 667 variant alleles and maps to 77 oligo probes.

Gene

This transcript is a product of gene ENSG00000113575.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000481195.1	PPP2CA-001	4649	309aa	ENSP00000418447.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4173	B3KQ51 B3KUN1 E5RHP4 P67775	NM_002715.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522385.1	PPP2CA-005	585	126aa	ENSP00000430869.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RHP4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000523082.1	PPP2CA-006	510	145aa	ENSP00000428816.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ESG8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000231504.5	PPP2CA-007	564	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495833.1	PPP2CA-003	739	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472253.1	PPP2CA-004	574	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 739 bps,

Version

ENST00000495833.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000258884 (version 1)

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Transcript: ENST00000495833.1 PPP2CA-003

Summary