Transcript: ENST00000510041.1 PCDH12-003

Description

protocadherin 12 [Source:HGNC Symbol;Acc:8657]

Gene Synonyms

VE-cadherin-2, VECAD2

Location

About this transcript

This transcript has 2 exons, is annotated with 2 domains and features, is associated with 424 variant alleles and maps to 136 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000231484.3	PCDH12-001	6562	1184aa	ENSP00000231484.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4269	E5RJD4 Q9NPG4	NM_016580.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000510041.1	PCDH12-003	572	23aa	ENSP00000429094.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJD4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000512221.1	PCDH12-004	465	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 572 bps, Translation length: 23 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000510041.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000370644 (version 2)