Transcript: ENST00000231004.4 LOX-001

Description

lysyl oxidase [Source:HGNC Symbol;Acc:6664]

Location

About this transcript

This transcript has 7 exons, is annotated with 21 domains and features, is associated with 6431 variant alleles and maps to 672 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000231004.4	LOX-001	5102	417aa	ENSP00000231004.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4129	B0AZT2 B4DN04 B7ZAJ4 D0PNI2 P28300 Q71V04	NM_002317.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508067.1	LOX-006	561	61aa	ENSP00000427538.1	Nonsense mediated decay		H0YAL3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000513319.1	LOX-002	1543	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505593.1	LOX-005	1379	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000503759.1	LOX-003	1643	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 5,102 bps, Translation length: 417 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P28300

CCDS

This transcript is a member of the Human CCDS set: CCDS4129

Version

ENST00000231004.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000250887 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.